Gut Bites MD

With modern diets, our microbiomes & mitochondria are a bit hangry, and so is our health. Science and wisdom tradition shed light on making them happy again to reclaim health.

Hold the Simple Carbs, I’m Starving!

In the wise words of Justin and Erica Sonnenburg, “We are starving our microbial selves.”[1]  This is certainly true for our gut microbiome. Due to modern processing and food preference, our diets are significantly depleted of the prebiotic fibers, phytonutrients, good fats, and fermented foods that feed gut microbes.  

What is less known is this may also be true for key factors that regulate their microbial brethren – the mitochondria – believed to be long ago co-opted bacteria that live within each and every one of our cells. The so-called ‘endosymbiosis theory’ for the bacterial origin of mitochondria is an evolutionary story of epic proportions that might trump even that of the microbiome.  But that’s a story for another time.[2] 

Powerhouses & Gate Keepers of Health

For now, consider the mitochondria as our cell powerhouses. They take the nutrients we consume – protein, fat, carbohydrates, vitamins, and minerals – and convert them to the energy currency of the cell, ATP.  It’s much like how a hydroelectric dam converts water to electricity.[3] 

Nutrient signals produced by our microbiome from a healthy diet – B vitamins, modified polyphenols, butyrate, and other short and medium chain fatty acids – play an important role in telling the mitochondria when to grow and how to most efficiently adapt to the always changing food stream in our gut.[4–8] In modern diets consisting largely of ultra-processed foods, many of these factors are missing and our microbiome and mitochondria are confused and unhappy. 

When our microbiomes and mitochondria are not happy, we’re not happy, and our physical and mental health most certainly suffers. Indeed, noncommunicable diseases as diverse as obesity, diabetes, autoimmune disease, cancer, depression, and even Alzheimer’s have all been linked to both microbiome and mitochondrial dysfunction.[9–12]

Weight Loss Solutions Abound, Yet We Still Get More Round

When it comes to obesity and metabolic diseases, most of us probably don’t think about our mitochondria though. Instead we tend to think in terms of “calories in” and “calories out” – the so called energy balance model of obesity.[13]

Decreasing total calories ingested (e.g intermittent fasting), decreasing the proportion of calories that come from carbohydrates (e.g. ketogenic diets) and changing dietary composition to impact appetite (e.g. high protein and fiber) can all contribute to weight loss.(See Blog on Weight Loss, Part 1 and Part 2)

Increasing the calories burned – as in physical activity and exercise – is also quite effective at weight loss. Walks immediately after meals in particular, and activities of any type including choosing stairs over escalators and finding one’s preferred exercise can be truly impactful.[14] 

At the Crux of the Matter

All of these approaches work through the mitochondria, by alleviating the glut of energy (sugar and starch in particular) that puts oxidative stress on these important organelles.[15,16] It may be less appreciated that tweaking the energy equation at its fulcrum, the mitochondrial powerhouses themselves, is complementary to these approaches.[17] 

Habitual exercise increases mitochondria in muscle cells leading to more energy consumption even at rest.[18] Habitual cold therapy – think cold showers and icy dips – increases mitochondria in cell types like brown fat and muscle for the purpose of generating more heat.[19]

Many pharmaceutical approaches for blood sugar and weight loss impact mitochondria. For example both metformin and GLP-1 increase mitochondrial genesis.[20,21]  

Powerful Plants for our Mitochondrial Power Plants

Plant nutrients like fibers, polyphenols, fatty acids, and their fermented products can also signal to the mitochondria (via epigenetic regulation) to ramp up their efforts to process carbohydrates, especially after being processed by the microbiome.[4,22] 

In whole foods, carbohydrates naturally come packaged part and parcel with these molecules–think fiber and fatty acids in whole grains and polyphenols in grapes. In ultra-processed foods, they have largely been removed. We effectively consume all the carbohydrate energy without the natural signals that allow the mitochondria to adapt to a carbohydrate energy surplus.[23] 

When they don’t receive these signals it impacts processing of the energy.[24] Over time it contributes to metabolic gridlock (aka inflexibility) with fat accumulating inside the cells (obesity) and sugar in the blood (diabetes).[17] Even though there is plenty of energy, we do not efficiently process it.[23] 

There’s Wisdom in Tradition

So how might we jumpstart our microbiomes and mitochondria? Fibers, polyphenols, healthy fats, and their ferments work both independently and through microbiome conversion – modified polyphenols, conjugated fatty acids, MCTs, butyrate, and other SCFAs – to alert our mitochondrial powerhouses to the presence of carbohydrate nutrients, stimulating them to multiply and increase their activity.[25,26] (See Blog on the Four F’s)   

It is no coincidence that the Mediterranean diet, one of the most studied and healthiest diets from around the globe, contains these dietary components in spades. This is true also for other healthy diets around the globe like those profiled in Blue Zones – Icaria, Sardinia, Okinawa, Nicoya, and Loma Linda – parts of the world where people disproportionately live to 100+ years of age.[27]

So bon appétit to your microbiome & mitochondria! Here’s a short list of The Four Phonetic F’s of Food to help serve as a simple to follow guide. 

The Four Phonetic F’s of Food

FIBERS (e.g. resistant starch, beta-glucan, arabinoxylan, inulin, pectin, gums)

-oats, barley & other whole grains

-beans, lentils & other legumes

-yams, potatoes & other tubers

-dark chocolate >70%

PHENOLS (e.g. curcumin, resveratrol, quercetin, EGCG, berberine)

-green tea, other teas & coffee

-berries, fruit & veggies

-turmeric, other spices & herbs

-dark chocolate >70%

HEALTHY FATS (e.g. omega-3 fatty acids)

-sardines, salmon & other fatty fish

-avocado, olives & their oils

-nuts, seeds & their butters

-dark chocolate >70%

FERMENTS (e.g. lactate, acetate, butyrate, conjugated fatty acids, probiotics)

-olives, pickles, sauerkraut, kimchi & miso

-vinegars, shrubs & kombucha

-yogurt, kefir, artisanal cheese

-dark chocolate >70%

More Articles & Resources

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